Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRGELWFAATPGGDRPVLVLTRDPVADRIGAVVVVALTR-----TRRGLVSELELTAVENRVP----SDCVVNFDNIHTLPRTAFRRRITRLSPARLHEACQTLRASTGC
1LKY Chain:A ((1-77))
------------------------------SIRLPAHLRLQPIYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSP-HSGDRLYELLQHILKQ---
General information:
TITO was launched using:
RESULT:
Template:
1LKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24036 for 417 contacts (-57.6/contact) +
2D Compatibility (PS) -7073 + (NN) -33 + (LL) 1816
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -32026.0 ( -76.80 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_1LKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LKY-query.scw
PDB file :
Tito_Scwrl_1LKY.pdb
: