Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDSKVAIVTGAAQGIGQAYAQALAREGASVVVADINADGAAAVAKQIVADGGTAIHVPVDVSDEDSAKAMVDRAVGAFGGIDYLVNNAAIYGGMKLDLLLTVPLDYYKKFMSVNHDGVLVCTRAVYKHMAKRGGGAIVNQSSTAAWLYSN---FYGLAKVGVNGLTQQLARELGGMKIRINAIAPGPIDTEATRTVT-----PAELVKNMVQTIPLSRMGTPEDLVGMCLFLLSDSASWITGQIFNVDGGQIIRS
2D1Y Chain:C ((3-244))
LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI---GGAFFQ--VDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGS---ALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGG-----
General information:
TITO was launched using:
RESULT:
Template:
2D1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174312 for 2070 contacts (-84.2/contact) +
2D Compatibility (PS) -25173 + (NN) -10741 + (LL) 1332
1D Compatibility (HY) -14800 + (ID) 4850
Total energy: -228544.0 ( -110.41 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_2D1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D1Y-query.scw
PDB file :
Tito_Scwrl_2D1Y.pdb
: