Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVHLTRIYTRTGDDGTTGLSDMSRVAKTDARLVAYADCDEANAAIGAALALGHPDT-QITDVLRQIQNDLFDAGADLSTPIVENPKHPPLRIAQSYIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWAAVDAHPEGVSVLPAKYLNRLSDLLFILSRVANPDG---DVLWRPGGDRTAS
3CI3 Chain:A ((7-192))
-----VKIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDE-RHSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREE--QINQDVLIFINRLSDYFFAAARYANYLEQQPDMLYRNSKDV---
General information:
TITO was launched using:
RESULT:
Template:
3CI3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68798 for 1367 contacts (-50.3/contact) +
2D Compatibility (PS) -19936 + (NN) -12780 + (LL) 756
1D Compatibility (HY) -9200 + (ID) 3350
Total energy: -113308.0 ( -82.89 by residue)
QMean score : 0.336
(partial model without unconserved sides chains):
PDB file :
Tito_3CI3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CI3-query.scw
PDB file :
Tito_Scwrl_3CI3.pdb
: