Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHTQLL
4QXM Chain:G ((2-269))
-TGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGF-RLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPI------------------------EEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHTQLL
General information:
TITO was launched using:
RESULT:
Template:
4QXM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172035 for 2037 contacts (-84.5/contact) +
2D Compatibility (PS) -26542 + (NN) -15663 + (LL) 2248
1D Compatibility (HY) -33200 + (ID) 12150
Total energy: -257342.0 ( -126.33 by residue)
QMean score : 0.782
(partial model without unconserved sides chains):
PDB file :
Tito_4QXM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QXM-query.scw
PDB file :
Tito_Scwrl_4QXM.pdb
: