Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLATIDKFAYEKSMLINVGDEKGTLLDAAVRRADPALALELGTYLGYGALRIAR-AAPEARVYSVELAEANASNARRIWAHAGVDDRVVCVVGTIGDGGRTLDALTEHGFATGTLDFVFLDHDKKAYLPDLQSILDRGWLHPGSIVVADNVRVPGAPKYRAYMRRQQGMSWNTIEHKTHLEYQTLVPDLVLESEYLG
3HVI Chain:A ((25-204))
VLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD----LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSS--SFECTHYSSYLEYMKVV-----------
General information:
TITO was launched using:
RESULT:
Template:
3HVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84815 for 1408 contacts (-60.2/contact) +
2D Compatibility (PS) -19122 + (NN) -3445 + (LL) 448
1D Compatibility (HY) -17600 + (ID) 3500
Total energy: -128034.0 ( -90.93 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_3HVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HVI-query.scw
PDB file :
Tito_Scwrl_3HVI.pdb
: