Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVV---RAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGN--TVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVPSPSEAAT
3MUF Chain:A ((11-151))
-----VLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPH--VISTGGGIVMHENLKGL---GTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQA---KELFEKRQALYEKNASFIID---------------------------
General information:
TITO was launched using:
RESULT:
Template:
3MUF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57707 for 967 contacts (-59.7/contact) +
2D Compatibility (PS) -14675 + (NN) -1469 + (LL) 2080
1D Compatibility (HY) -12400 + (ID) 2450
Total energy: -86621.0 ( -89.58 by residue)
QMean score : 0.667
(partial model without unconserved sides chains):
PDB file :
Tito_3MUF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MUF-query.scw
PDB file :
Tito_Scwrl_3MUF.pdb
: