Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALA-CVDGHGSVLMPCGRCRQVLLEHGGSELLI----DHPVRPRRLGDLLPDAFGLDDLPRERR
1ZAB Chain:C ((21-144))
-----------SSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREFGTDWAVYMTKPDGTFVVRTVQELLPASFGPEDLQK---
General information:
TITO was launched using:
RESULT:
Template:
1ZAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75380 for 858 contacts (-87.9/contact) +
2D Compatibility (PS) -13417 + (NN) -7698 + (LL) 800
1D Compatibility (HY) -7200 + (ID) 2450
Total energy: -105345.0 ( -122.78 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_1ZAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZAB-query.scw
PDB file :
Tito_Scwrl_1ZAB.pdb
: