Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAIDPNSIGAVTEPMLFEWTDRDTLLYAIGVGAGTGDL----AFTTENSHGIDQQVLPTYAVICCPAFGA----A-AKVGTFNPAALLHGSQGIRLHAPLPAAG-KLSVVTEVADIQDKGEGKNAIVVLRGRGCDPESGSLVAETLTTLVLRGQGGFGGARG-ERPA---APEFPDRHPDARIDMPTREDQALIYRLSGDRNPLHSDPWFATQLAGFPKPILHGLCTYGVAGRALVAELGGGVAANITSIAARFTKPVFPGETLSTVIWRTEPGRAVFRTEVAGSDGAEARVVLDDGAVEYVAG |
| 1PN2 Chain:A ((4-272)) | -------------DPVWRFDDRDVILYNIALGAT--TKQLKYVYENDS----DFQVIPTFGHLITFNSGKSQNSFAKLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGT--NVVIVHGSKSVDNKSGELIYSNEATYFIRNCQADNKVYADRPAFATNQFLAPKRAPDYQVDVPVSEDLAALYRLSGDRNPLHIDPNFAKG-AKFPKPILHGMCTYGLSAKALIDKF-----GMFNEIKARFTGIVFPGETLRVLAWKESDDTIVFQTHVVD-R---GTIAIN-NAAIK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PN2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -112660 for 2047 contacts (-55.0/contact) +
2D Compatibility (PS) -27239 + (NN) -14705 + (LL) 708
1D Compatibility (HY) -16000 + (ID) 4550
Total energy: -174446.0 ( -85.22 by residue)
QMean score : 0.358
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