Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSG----VVDTVVVAVPADRT--DEARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVL--PLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
2YC5 Chain:A ((5-224))
-------VSVILLAG--------SMPKQYIPLLGQPI---ALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPGKERQDSVYSGLQEIDVNSE--LVCIHDSARPLVNTEDVEKV---LKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSE--GLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL--
General information:
TITO was launched using:
RESULT:
Template:
2YC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141518 for 1535 contacts (-92.2/contact) +
2D Compatibility (PS) -21325 + (NN) -4991 + (LL) 1800
1D Compatibility (HY) -14400 + (ID) 3500
Total energy: -183934.0 ( -119.83 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_2YC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YC5-query.scw
PDB file :
Tito_Scwrl_2YC5.pdb
: