Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
3KB8 Chain:B ((21-202))
---------------------------QSNAMMNQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVP------LAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLKADYVGFTVPHEFVVGYGLDYKEQYRNLPYVGVLKPSVY-
General information:
TITO was launched using:
RESULT:
Template:
3KB8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165632 for 1397 contacts (-118.6/contact) +
2D Compatibility (PS) -19902 + (NN) -8946 + (LL) 2020
1D Compatibility (HY) -22000 + (ID) 4550
Total energy: -219010.0 ( -156.77 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_3KB8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KB8-query.scw
PDB file :
Tito_Scwrl_3KB8.pdb
: