Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDLTLHYLYDPLCGWCYGASPLL--AAACEV---TGLDVRLHGGGMMTDANRQPVGAGLRHYVMPHDLRIAQLTGQPFGKDYFDGLLRDTSAVFDSAPPTAAVLAAEALDGLGAAMLARIQRAHYVEGRRIAERPVLLELGA-ELGLG-EGFAEAFDACSGEPLRAHFADSRRLMNRLGAAGFPTFALERDGRLQVLD-TGRYLGQPDDW----RAFLETQLRLAGGSGAVGGAAAPLCRIDGCA
3L9V Chain:A ((16-184))
---PAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGPL---------------------------------------------GHELTRAWALAMVMK-ETDVIEKAFFTAGMVEKR-LHSPDDVRRVFMSATGISRGEYDRSIK---SPAVNDMVALQERLFKEYGVRGTPSVYVRGR---YHINNAAFGAFSVENFRSRYAAVVRKLLAG---------------------
General information:
TITO was launched using:
RESULT:
Template:
3L9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89177 for 1139 contacts (-78.3/contact) +
2D Compatibility (PS) -16826 + (NN) -6069 + (LL) 2756
1D Compatibility (HY) -7200 + (ID) 1100
Total energy: -117616.0 ( -103.26 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_3L9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L9V-query.scw
PDB file :
Tito_Scwrl_3L9V.pdb
: