Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRAVVELLAGARRLVIFTGAGVSAESGIPTFRDALGGLWARYDPAALATPAAFADDPALVWGWYEWRRLKVLGVQPNPAHRAIAALSGRIA----NTRLVTQNVDDLHERAGSRDVLHLHGSLHAPRCATCA---AAYRDAL---------PDSVEPEEGRRIE-PPRC--PACGGQVRPGVVWFGEALPEAALREAFAAACECDLLLSVGTSGVVQPAARIPGLALEHGASVVHVNPQPVRTRHPREHCLVGPAGEVLPELLRRAFPG
4UU8 Chain:B ((13-274))
LTAFREHFAKAKHIAIITGAGVSAESGVPTFRGP-GGFWRKWQAQDLATPEAFSRDPSLVWEFYHYRREVMRSKMPNPAHLAIAECEARLGQQGRSVVIITQNIDELHHRAGSKHVYEIHGSLFKTRCMSCGEVKANHKSPICPALDGKGAPDPNTKEARIPVELLPRCERKSCNGLLRPHVVWFGETLDSDILTAVERELEKCDLCLVVGTSSIVYPAAMFAPQVASRGVPVAEFNMECTPATQRFKYHFEGPCGSTLPPALE-----
General information:
TITO was launched using:
RESULT:
Template:
4UU8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133961 for 1949 contacts (-68.7/contact) +
2D Compatibility (PS) -26408 + (NN) -19395 + (LL) 512
1D Compatibility (HY) -16000 + (ID) 5200
Total energy: -200452.0 ( -102.85 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_4UU8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UU8-query.scw
PDB file :
Tito_Scwrl_4UU8.pdb
: