Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTCAYRREIHHAHVAIRDWLAGDSRADALDALMARFAEDFSMVTPH----GVVLDKTALGELFRSKGGTRPGL-RIE-IDGESLLASGVDGATLAYREIQSDAAGRSERLSTVVLHRDDEGRLYWRHLQETFCG
3DMC Chain:A ((11-120))
--------LKVAHQGFEFFTQGLAT-GEWQKFLDMLTEDFTFWFPMGEFHGLNVGKERAKEFFTYVSESFHTGIQISSLDRVT---SNETTVVFEFRDEGLFLGKPYKNRVAVSFDVR-GDKICSYREYFGSDG
General information:
TITO was launched using:
RESULT:
Template:
3DMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21831 for 657 contacts (-33.2/contact) +
2D Compatibility (PS) -10983 + (NN) -4977 + (LL) 1420
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -41971.0 ( -63.88 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_3DMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DMC-query.scw
PDB file :
Tito_Scwrl_3DMC.pdb
: