Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MSSEPLEPNQDVIIPRSRDSLGRPVYKAQLTRTDNQSEKVALIRQTAPLPVIFIPGIMGTNLRNKADKSEVWRPPNGLWPMDDLFASIGALWTW------AWRGPKARQELLKAEQVEVDDQGTIDVGQSGLSEEAARLR---------------GW----GKVMRSAYNPVMGLMER--RLDNIVSRRELQAWWNDEALSPPGDQGEEQGKVG------PIDEEELLRASRYQFDVWCAGYNWLQSNRQSALDVRDYI---ENTVLPFYQKECG-LDPEQMRRMKVI-LVTHSMGGLVARALTQLHG--YERVLGVVHGVQPATGSSTIYHHMRCGYEGIAQVVLGR-------NAGEVT----AIVANSAGALELA----PSAEYR--EGRPWLFLCDAQGQVLKDIDGKPRAYPQNQDPYEEIYKN----TTWYGLVPEQNSQYLDMSDKKEGLRVGPRDNFEDLIDSIANFHGELSAAGYHSETYAHYGADDSR-----HSWRDLIWKGDPTPLETPGATLNDDENGTYNSWFRRGLPTIVQGPLETGNPLDASGSGGDETVPTDSGQAPALAGVKASFRHGSKGKGQANTKRGYEHQESYNDARAQWAALYGVIK-ITQLADWHPNDKGGT--------------------- |
| 3VSM Chain:A ((27-659)) | NIQELQNFERWFKNNLSYSFSQKAEKVVNPNRNWNDNTVFDNLSPWTSVPDFGTVCHTLIGYCVRYNNTSDTLYQNPELAYNLINGLRIICSKLPDPPPHQQAPWGPVADWYHFTITMPEVFMNITIVLNETQHYDEAASLTRYWLGLYLPTAVNSMGWHRTAGNSMRMGVPYTYSQMLRGYSLAQIRQEQGIQEILNTIAF-PYVTQGNGLHVDSIYIDHIDVRAYGYLINSYFTFAYYTYYFGDEVINTVGLTRAIENVGSPEGVVVPGVMSRNGTLYSNVIGNFITYPLAVHSAD--YSKVLTKLSKTYYGSVVGVTNRLAYYESDPT--NNIQAPLWTMARRIWNRRGRIINYNANTVSFESGIILQSLNGIMRIPSGTTSTQSFRPTIGQTAIAKTDTAGAIL--VYAKFAEMNNLQFKSCTLFYDHGMFQLYYNIGVEPNS----LNNTNGRVIVLSRDTSVNTNDL--SFEAQRINNNNSSEGTTFNGVVCHRVPITNINVPSLTVRSPNSSVELVEQIIS--FQTMYTATASACYKLNVEGH---SDSLRAFRVNSDENIYVNVGN-----GVKALFNYP---WVMVKENNKVSFMSANEDTTIPFSVIMNSFTSIGEPALQYSPSNCFVYGNGFKLNNSTFDLQFIFEIV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 54578 for 4406 contacts (12.4/contact) +
2D Compatibility (PS) -55427 + (NN) 2027 + (LL) 1432
1D Compatibility (HY) -16400 + (ID) 5100
Total energy: -18890.0 ( -4.29 by residue)
QMean score : 0.139
|
|
|