Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPFSERISRLKSSLIREILAAAQRPEVMSFAGGLPAEPMLPKVQWEQM----P----ASMGQYGMSEGEPALREAIAAEARAL-GVPCEASQVLIVSGSQQTLDLASKLFIDPGTEVLLEAPTYLAALQAFQLFGADCVTVPLGAEGPDLVALRQRLER-----HKPAFAYLIPTFQNPSGVRYSEERRDAVAALLDEFGVTLIEDEPYRELVFDEGRATP-LVSRLRKSSWIYTGTVSKTLLPGLRVGFLIATPDLFPHLLRLKQSADLHTNRVGQWQALQWFGSEAYRQHLAELREFYRVRRDAMQEALLEHFGELAEWNIPEGGLFFWLTLRQPLDTRTLLQPALAADVAFMPGEPFFAEPEQNLGRLRLNFSHVAPERLHEGLRRLAKVVRDAQAAEAA |
| 3AOW Chain:A ((54-447)) | --FSKKALEMRASEVRELLKLVETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQ-DNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN-PEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHR-DVKNTMRLNFTYVDEDKIMEGIKRLAETIKEELKA--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AOW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -212902 for 3296 contacts (-64.6/contact) +
2D Compatibility (PS) -42351 + (NN) -28098 + (LL) 768
1D Compatibility (HY) -33200 + (ID) 7000
Total energy: -322783.0 ( -97.93 by residue)
QMean score : 0.563
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