Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQMMQMYQQVGPAQFSAMIGQFAPYFASIAPQFVELRPGYAEVTFPKRREVL-NH-IGTVHAIALCNAAELAAGTMTDASIPAGHRWIPRGMTVEYLAKAT-G-DVRAVADGSQIDWQAT-GNLVVPVVAYVD-D-KPVFRAEITMYVSQA
3F1T Chain:A ((15-139))
---------------------SALRHCQVLGLTVEAADEKGLTLRLPYSQAIIGNPESGVVHGGAITTLMDTTCGISTVCVLPDFEICPTLDLRIDYMHPAEPHKDVYGFAECY----RVTPNVIFTRGFAYQDDPGQPIAHVVGAFMRM--
General information:
TITO was launched using:
RESULT:
Template:
3F1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77479 for 884 contacts (-87.6/contact) +
2D Compatibility (PS) -12641 + (NN) -3866 + (LL) 2676
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -95060.0 ( -107.53 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_3F1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F1T-query.scw
PDB file :
Tito_Scwrl_3F1T.pdb
: