Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------MTRAINDPGNEDPGSLLET---DADALLGGAAAQAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLLERRSPWAPAACELAARYALAC---------AERCDGDEPLERECAGACRRF-VEACRPLLPA------------------------
4U5A Chain:A ((8-200))
NNIIEEFDKLSDDFSNDINATKQTIKDLFLDIEASDDVVKLLSKYSFVPEEKLNIIDGILRSFIENNKTHVINSSNAYIYIQKE--KIKNVCNFILKKLNSLIQINELNKSHIILKYGKGEAKKGVLESIKNNDDISKNLKSELLKYRVSELINFITPIYDDFIKNLTDLINDLQIKLKNIS
General information:
TITO was launched using:
RESULT:
Template:
4U5A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28133 for 727 contacts (-38.7/contact) +
2D Compatibility (PS) -14499 + (NN) -7674 + (LL) 200
1D Compatibility (HY) -8000 + (ID) 750
Total energy: -58856.0 ( -80.96 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_4U5A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U5A-query.scw
PDB file :
Tito_Scwrl_4U5A.pdb
: