Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQAEALK----DAGVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
1ZIP Chain:A ((1-188))
MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQ-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1ZIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64845 for 1344 contacts (-48.2/contact) +
2D Compatibility (PS) -20078 + (NN) -10848 + (LL) 2132
1D Compatibility (HY) -16000 + (ID) 4750
Total energy: -114389.0 ( -85.11 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1ZIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZIP-query.scw
PDB file :
Tito_Scwrl_1ZIP.pdb
: