Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKPCHFAQFDLQPAFLVDLDELGQRYRELVRSVHPDRFADAPEREQRLALERAAQLNEAYQTLKSAPRRALYLLTLSGHELPLEATVQDPEFLLQQMQLREELEELQDSADLAGVATFKRRLKAAQAELEREFAACWDDAQRREEAERLVRRMQFLDKLAQEVRQLEERLDD
2CTP Chain:A ((5-69))
-SSGDYYEILGVSRG--ASDEDLKKAYRRLALKFHPDKNHAP------GATEAFKAIGTAYAVLSNPEKRKQYD---------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2CTP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18546 for 408 contacts (-45.5/contact) +
2D Compatibility (PS) -7242 + (NN) -6645 + (LL) 10616
1D Compatibility (HY) -800 + (ID) 700
Total energy: -23317.0 ( -57.15 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_2CTP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CTP-query.scw
PDB file :
Tito_Scwrl_2CTP.pdb
: