Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLVLFCCLWLLPGVASAAPSVGEIRVVS-ETWTRYTQED----GRGVAWDLLRAVYEPAG---VRLRIANEPYTRAVGLVLRGEADAWVG-AYRGEIDE--ALYPRWPYDVDPIAVLSLKDNPPPPLEGLSRFRLSWMRGYAFARYFPT---LTPHSELQRRTSALPMLLNHRVDYFIDSRPELEEMLAGAGALAAEYRITD-VTRLPLYLGFSDSPRGRELLALFDRRMRQLHASGELERIFARWNWPYAPLKAILPPKE
1XT8 Chain:A ((41-267))
--------------------KQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCS-PYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHP--DFKMGIKELGNKDVIAPAVKKG--DKELKEFIDNLIIKLGQEQFFHKAYDETLKAH-----------
General information:
TITO was launched using:
RESULT:
Template:
1XT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111078 for 1742 contacts (-63.8/contact) +
2D Compatibility (PS) -23030 + (NN) -10230 + (LL) 3332
1D Compatibility (HY) -4400 + (ID) 1400
Total energy: -146806.0 ( -84.27 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_1XT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XT8-query.scw
PDB file :
Tito_Scwrl_1XT8.pdb
: