Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVGQDVMRCLMALGLVLQGLSFGAQAAPGGAVELYRYVNDKGVVVLDRQGVPPQYIGKGYQVLNDQGRVIRTVPPAPTAEELRQRKAAQAQASSDAQLLRLYSSLEDVDRARERRLAELDGLSSVARGNLQSLKLQQANLQGQAANQERAGRPVAQALVDQLDDLKQEEKRLQGEIGRFQKAREDAERTYAADRARLSQLLGVSP |
| 1NYH Chain:A ((1271-1346)) | ------------------------------------------------------------------------------------------------------------------------------LSFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKLME--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NYH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 11091 for 302 contacts (36.7/contact) +
2D Compatibility (PS) -8848 + (NN) -4929 + (LL) 8940
1D Compatibility (HY) -2400 + (ID) 600
Total energy: 3254.0 ( 10.77 by residue)
QMean score : 0.685
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