Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MVSANQTASVTEFILLGLSAHPKLEKTFFVLI------LLMYLVILLGN-------GVLILMTVSNSHLHMP-----MYFFLGNLSFLDICYTTSSVPLILDSFLTPRKTISFSACAVQMFLSFAM-------------GATECVLLSMMAFDRYVAIC--------------NPLRYPVVMSKAAYMPIRLPAPG----
1AER Chain:A ((1-211))
AFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRAAIWRGFYIAGDPALAYGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAA--PEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGWPLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPGKPPR
General information:
TITO was launched using:
RESULT:
Template:
1AER.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113826 for 909 contacts (-125.2/contact) +
2D Compatibility (PS) -15736 + (NN) -6940 + (LL) 256
1D Compatibility (HY) 1600 + (ID) 1600
Total energy: -136246.0 ( -149.89 by residue)
QMean score : 0.145
(partial model without unconserved sides chains):
PDB file :
Tito_1AER.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AER-query.scw
PDB file :
Tito_Scwrl_1AER.pdb
: