Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSIINTSYVEITTFFLVGMP-----------GLEYAHIWISIPICSMYLIAILGNGTILFIIKTEPSLHEPMYYFLSMLAMSDLGLSLSSLPTVLSIFLFNAPEISSNACFAQEFFIHGFSVLESSVLLIMSFDRFLAIHNPLRYTSILTTVRVAQIGIVFSFKSMLLVLPFPFTLRNLRYCKKNQLSHSYCLHQDVMKLACS--------DNRIDVIYGFFGALCLMVDFILIAVSYTLILKTVLGIA----SKKEQLKALNTCVSHICAVIIFYLPIINLAVVHRFAR-HVSPLINVLMANVLLLVPPLTNPIVYCVKTKQIRVRVVAKLCQRKI---------------- |
1F88 Chain:A ((1-348)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM--SNFRFGENHAIMGVAFTWVMALACAAPPL------------VGWSRYIPEG-MQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -286340 for 2407 contacts (-119.0/contact) +
2D Compatibility (PS) -30302 + (NN) -6099 + (LL) 1224
1D Compatibility (HY) -21600 + (ID) 2600
Total energy: -345717.0 ( -143.63 by residue)
QMean score : 0.269
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