Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKKEERLGVLLWFRFSRFYNRNMKLTNQNLRAAGISTAQFDCIAQIGLDKEITQQQLAEKLVVTKGNVTQLLAKLEQLGYITRTK---TGREKHITLTEKGQACYRENVPKQ-EAFQQAQFDKLTRDEQKELLKLLKKLGE
1JGS Chain:A ((3-137))
--NEIIPLGRLIHMV----NQKKDRLLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTADEVATLEYLLKKVL-
General information:
TITO was launched using:
RESULT:
Template:
1JGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33112 for 789 contacts (-42.0/contact) +
2D Compatibility (PS) -14229 + (NN) -7724 + (LL) 840
1D Compatibility (HY) -9200 + (ID) 1850
Total energy: -65275.0 ( -82.73 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1JGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JGS-query.scw
PDB file :
Tito_Scwrl_1JGS.pdb
: