Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTI--SSEAKKTLNSLASSGAD---KASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKADEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTIINAESAFTNATKAENKMWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYD--DTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVP-TYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF |
| 3S99 Chain:A ((26-355)) | KLKVGFIYIGP------PGDFGWTYQHDQARKELVEALG-DKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFP------DVKFEHAT-----------GYKTADNMSAYNA-------------RFYEGRYVQGVIAAKMSKKGIAGYIGSVPV-------------------------------------------PEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDSTAAIQVAHDRG------------------IKAFGQASDMIKFAP---------------DTQLTAVVDEWGPYYIDRAKAVLD-------------------------GTWKSQNIWWGMKEGLVKMAP--FTNMPDDVKKLAEETEARIKSGELNPFTGPIKKQDGSEWLKAGEKAD------DQTLLGMNFYVAGVDDKLP-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3S99.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10698 for 2842 contacts (-3.8/contact) +
2D Compatibility (PS) -33968 + (NN) -4577 + (LL) 9448
1D Compatibility (HY) -8000 + (ID) 2450
Total energy: -50245.0 ( -17.68 by residue)
QMean score : 0.194
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