Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDISQIKAEVVTPETGIHVGEKAAPVKVMSFVNLRCPFCREWNEKSKD-VLTEYIQAGKIELIIKPFDKEKESLQRGNVTHRYLDYSTPEKTRETINKIYSKQDEWG--SL-SLDEVATYMESELGLTEQ---------DNKAASEKIVAEA-NAANVVFVPTVIVGEH-----------IFDEHISPEELRSLLDDELAK
3F4S Chain:A ((23-211))
-------ELLLPLPNDKLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYE---KQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAA-LSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKLYG-
General information:
TITO was launched using:
RESULT:
Template:
3F4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39409 for 1220 contacts (-32.3/contact) +
2D Compatibility (PS) -17282 + (NN) -2264 + (LL) 720
1D Compatibility (HY) -9600 + (ID) 1300
Total energy: -69135.0 ( -56.67 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3F4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F4S-query.scw
PDB file :
Tito_Scwrl_3F4S.pdb
: