Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKKIILSIATIAATASLAVSVQASEKVELKVATDSDTAPFTYQKDGKFKGYDVDVVKAVFKGSKYKVTFKTV-PFDTISTGIDAGKFDLSANDFSYNKERAEKYLFSDPISRSNYAVVGKKGSHYKSLSDLSGKSTEVLSGVNYAQVLENWNKNHPNKKPIKIKYVSGTTGVTSRLKNIESGKIDFILYDAISSDYIVKDQS-LNLSVSPLKGKIGNNKDGLEY-LLLPKDKKGKTLQKFINKRIKVLKENGTLARLSKQYFGGDYVSNIDK |
2PYY Chain:A ((4-223)) | ----------------------------PLLVAT-RVIPPFVLSN---LSGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRN-GDIRSIDDLPGKVVATTAGSTAATYLREHH--------ISVLEVP-K--IEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEI--VGSI---L-REESYGIILPNN---SPYRKPINQALLNLKENGTYQSLYDKWFDP-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PYY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91803 for 1711 contacts (-53.7/contact) +
2D Compatibility (PS) -22402 + (NN) -5042 + (LL) 2524
1D Compatibility (HY) -16000 + (ID) 2400
Total energy: -135123.0 ( -78.97 by residue)
QMean score : 0.524
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