Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIQEIKDLMTQFDESSLREFSFKTSDGELSFSKNEGKAPLVPTMSPMSHQPEATPTIATPVSNEAGEQTKQATEVVSEIPESTVTVAEGDVVESPLVGVAYLASGPDKPNFVSVGDSVKKGQTLMIIEAMKVMNEVPAPHDGVVTEI-------LVANEEVIEFGKGLVRIK
3N6R Chain:C ((628-680))
----------------------------------------------------------------------------------------------------------------VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE-------
General information:
TITO was launched using:
RESULT:
Template:
3N6R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23760 for 230 contacts (-103.3/contact) +
2D Compatibility (PS) -4767 + (NN) 2199 + (LL) 6428
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -26150.0 ( -113.70 by residue)
QMean score : 0.068
(partial model without unconserved sides chains):
PDB file :
Tito_3N6R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N6R-query.scw
PDB file :
Tito_Scwrl_3N6R.pdb
: