Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKLIAIDMDGTLLNDEKKIPKENIQAIKEATQAGIKIVLCTGRPMSGILPYFNELGLTKEEYIIMNNGCSTYSTKDWQLIDSATLTHDELIFLEEVVKEFPNVCLTLTAENTFYAVGEEV----PEIV-AYDA---DL-VFTKAKSTSLDALRNQEE-IVFQAMYMGLDADVTAFQEAVEEALISKFSGVRSQDYIYEIMPQGVTKARGLKSLIAKLGLDINQVMAIGDAPNDIELLDLVPNSVAMGNASDEIKSRCKYITVDNNKAGVAKAIYDYALR |
| 3DNP Chain:A ((6-275)) | -KQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKL--DAKLITHSGAYIAEKI-DAPFFEKRISDDHTFNIVQVLESY-QCNIRLL--HEKYSIGNKKKVNSNLLGKALIHPSDPIFYP-VQFVESLSDLLMDEPVSAPVIEVYTEHDIQHDITETITKAFP-AVDVIRVNDEKLNIVPKGVSKEAGLALVASELGLSMDDVVAIGHQYDDLPMIELAGLGVAMGNAVPEIKRKADWVTRSNDEQGVAYMMKEYFRM |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170163 for 2253 contacts (-75.5/contact) +
2D Compatibility (PS) -28035 + (NN) -9971 + (LL) 380
1D Compatibility (HY) -13200 + (ID) 3200
Total energy: -224189.0 ( -99.51 by residue)
QMean score : 0.520
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