Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQILEDYDGRALPKLETDRLILRQRTVGDVPAMFDYVCLEEV---AYPAGLSPIASLEDEYDYFENRYYQNLEKAKLPSGYGITVKGSDRIIGSCAFNHRR-EDDVFEIGYLLHPDYWGHGYMTEAVAALIEVGFTLLNLHKIEIRCYDYNKQSQRVAEKLGFTLEATIRDRKDNQGNRCVNLIYGLLRSEWE
3R9F Chain:A ((16-186))
-------------IKVNDEITLLYPALKYAEELYLLINQNKINFIKSMAWPAFVNNISDSVSFIEQSMIDNQ-N---EKALILFIKYKTKIAGVVSFNIIDHANKTAYIGYWLGANFQGKGIVTNAINKLIQEYGDSGVIKRFVIKCIVDNKKSNATALRCGFTLEGVLQKAEILNGVSYDQNIYSKVI----
General information:
TITO was launched using:
RESULT:
Template:
3R9F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69707 for 1224 contacts (-57.0/contact) +
2D Compatibility (PS) -18165 + (NN) -5539 + (LL) 1680
1D Compatibility (HY) -9200 + (ID) 1750
Total energy: -102681.0 ( -83.89 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_3R9F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R9F-query.scw
PDB file :
Tito_Scwrl_3R9F.pdb
: