Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDKFLEKYQALKDEKLTWHLIGSLQRRKVKDVINY--VDYFHALDSVKLAAEIQKRAQK------PVKCFLQVNISREDSKHGFT-IEQIDDALNLI--SRYDKIELIGI-MTMAPLKATKEEISSIFEETESLRKRLQARNIERMPFTELSMG-M-SRDYDIAIQNGSTFVRIGTSFFK
1CT5 Chain:A ((2-245))
TGITYDEDRKTQLIAQYESVREVVNAEAKNVKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDD-IKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSW----NRDFATLVEWKKKIDAKFG---------TSLKLSMGMSADFREAIRQGTAEVRIGTDIFG
General information:
TITO was launched using:
RESULT:
Template:
1CT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116427 for 1637 contacts (-71.1/contact) +
2D Compatibility (PS) -22571 + (NN) -5150 + (LL) 1272
1D Compatibility (HY) -12800 + (ID) 2750
Total energy: -158426.0 ( -96.78 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_1CT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CT5-query.scw
PDB file :
Tito_Scwrl_1CT5.pdb
: