Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFFPNIDNIIKNYIKEMITHSDIPDLQKQLETAYQVPYSFALGIYIS----TIESIILNWIDHDFTEEPEEIARYITSVVRI----
1PSD Chain:A ((326-409))
--FPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLLY
General information:
TITO was launched using:
RESULT:
Template:
1PSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28217 for 511 contacts (-55.2/contact) +
2D Compatibility (PS) -8195 + (NN) -554 + (LL) 340
1D Compatibility (HY) 1600 + (ID) 650
Total energy: -35676.0 ( -69.82 by residue)
QMean score : 0.207
(partial model without unconserved sides chains):
PDB file :
Tito_1PSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSD-query.scw
PDB file :
Tito_Scwrl_1PSD.pdb
: