Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRRRIKPIVVAVFFSLFGLLLIIGHLHSTNTLKKELV--EAKKTIPSVKASKVPQKSTSSKDKEFV-------LKPIIDVSGWQLPKEIDYDTLSKNISCVVIRV------------FGGSKISKTNNAAYTTGIDKSFKTHIKEFQKRN------IPVAVYSYALGSSVKEMKEEAQIFYKNAAPY----KPTFYWIDV-EEETMSNMNKGVQAFRKELKRLGAKNVGIYIGTYFMTEQGISVKGFDAVWIPTYGSDSGYYEAAPQT---ELKYDLHQYTSQGYLPGFNQPLDLNQIAVNKDKKKTYEKLFGKVKE |
| 1NVM Chain:B ((1-312)) | MNQKLKVAIIGS--GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAVQAYVPGYRLKQQVQFDVIPESAPLNIPGLGRFSGLKTSVFLEVEGAAHYLPAYAGNLDIMTSAALATAERMAQSMLNA--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48259 for 2296 contacts (-21.0/contact) +
2D Compatibility (PS) -29214 + (NN) -565 + (LL) 624
1D Compatibility (HY) 1200 + (ID) 1500
Total energy: -77714.0 ( -33.85 by residue)
QMean score : 0.117
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