Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MKKFFTNKFWLGVVS--LFLAILLFLTATATSMNHQDNSKIAGASETYTHTLTDVPID-------IKYDSDDYFISGYSYG-----------------------ADVYMSSVNR-----VKL-DSEI--NEDTRKFKVVADLTNMKPGTHK----VPLKVVNLPSGVNATV----------SPTTITVT--------------------MGKKKTKEFPVYGHV---NDKQIKAGYAVDKMSVDVS-----KVKVTS----DESIIDRIDHVAANIPDDKVLDDDFNK-TVTLQ------AVTADGTVLASIIHPSKATLSV-------KVKKLTKTVPINLIPVGQFSDSISKINYKLSQEKAVISGTKEALEAISVINAEVDISD---------VTKNTEKK-----INLSANNVSVDPAQVTVQLTTTKK------------------ |
| 4UX8 Chain:A ((1-480)) | LYFSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPCQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRE---NRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHREEVVMVPFPVTVYDEDDSAPTFPAGVDTASAVVEFKRKEDTVVATLRVFDADVVPASGELVRRYTSTLLPGDTWAQQTFRVEHWPNETSVQANGSFVRATVHDYRLVLNRNLSISENRTMQLAVLVNDSLHLPSTYSLSVSRRARRFAQIGKV---CVENCQAFSGINVQYKLHSSGANCSTLGVVTSAEDTSGILFVNDTKALRRPKCAELHYMVVATDQQTSRQAQAQLLVTVEGSY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UX8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3570 for 1774 contacts (-2.0/contact) +
2D Compatibility (PS) -32178 + (NN) 11676 + (LL) 156
1D Compatibility (HY) -12000 + (ID) 3000
Total energy: -38916.0 ( -21.94 by residue)
QMean score : 0.135
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