Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MACIIRRARLGDEVNLAYIQT-ESWKAAFGKILPEDIIQK-TTE-IEPAITMYQQLLH-KEVGKGYILEVDSNPHCMAWWDKSREDGMLDYAELICIHSLKEGWGKGYGSQMMNHVLSEIQQAGYNKVILWVFTENTRARKFYDRFGFSFKGKSKTYFE-KEEMCYEKILH
3LOD Chain:A ((-1-151))
AMYTITDIAPTDAEFIALIAALDAWQET------------LDLSQLPPQTVIALAIRSPQGEAVGCGAIVL-----------SE----EGFGEMKRVYIDPQHRGQQLGEKLLAALEAKARQRDCHTLRLETGIHQHAAIALYTRNGYQTRCAFAPYQPDPLSVFMEKPLF
General information:
TITO was launched using:
RESULT:
Template:
3LOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70197 for 973 contacts (-72.1/contact) +
2D Compatibility (PS) -14650 + (NN) 15 + (LL) 1452
1D Compatibility (HY) -1600 + (ID) 1100
Total energy: -86080.0 ( -88.47 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_3LOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LOD-query.scw
PDB file :
Tito_Scwrl_3LOD.pdb
: