Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYSFEELLATMTLITAAEIEDKI-DSNQDFVLFIGRISCPFCHLFVPKIVEVADED--EFELFHLDSEDFDHWTANKEFRNKYDIPTVPGLMVVKNG-TI-KVKCDSKMTKEEIREFIG
3DXB Chain:A ((9-113))
-----PMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP------GTAPKYGIRGIPTLLLFKNGEVAATKV-GALSK-GQLKEFLD
General information:
TITO was launched using:
RESULT:
Template:
3DXB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72388 for 699 contacts (-103.6/contact) +
2D Compatibility (PS) -10502 + (NN) -1874 + (LL) 1008
1D Compatibility (HY) -6000 + (ID) 950
Total energy: -90706.0 ( -129.77 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3DXB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DXB-query.scw
PDB file :
Tito_Scwrl_3DXB.pdb
: