Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVATLIIIRGNSASGKSKIAKQLQAELGENTLLLSQDYLRREMLGTK---DGEN-T--TTIPLLINLLNYGY-HNCSYIILEGILRSDWYTPVWKHILKHNPNNTYAYYYDLSFQETVKRHSTRLKSLEFGEDSLARWWLEKDFLKEIPEKILTKAM-SLEDVKKLIMTDVLP
2VLI Chain:A ((5-170))
--SPIIWINGPF----THTAHTLHERLP-GSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRD-----VNVGTVEDRLNELR--GEQFQTHIDTAGLGTQQVAEQIAAQVGL
General information:
TITO was launched using:
RESULT:
Template:
2VLI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55926 for 1043 contacts (-53.6/contact) +
2D Compatibility (PS) -16476 + (NN) -10236 + (LL) 1312
1D Compatibility (HY) -4000 + (ID) 1100
Total energy: -86426.0 ( -82.86 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2VLI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VLI-query.scw
PDB file :
Tito_Scwrl_2VLI.pdb
: