Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIVEGVSLHLIKNQQFK--TNHLTFRFSGDFN---NKTVARRSLVAQMLVTANAKYPKVQEFREKLASLYGASLSTKISTKGLVHIVDIDIVFVKNTFTLEQENIVEQIITFLEDMLFSPLISLEQYQTSIFDTEKKNLIQYLEADIE-DNFYSSDLALKSLFYNNKTLRLPKYGTASLVESENSFTAYQEFQKMLKEDQLDIFVVGDFDDYRMIQA---F-NRMAFEPRHKVLAFDY------TQTYENITRSQ-VEDKDVNQSIMQLAYHLPITYKDEDYFALIVFNGLFGAFAHSLLFTEIREKQGLAYTIGSQFDSF----TGLFTIYAGIDKENRERFLKLINKQFNNIKMGRFSSTLLKQTKDILKMNYVLASDNPKVIVDHIYHEHYLDQF--HTSALFIDKVDDVTKSDIVSVATKLKLQAFYFLEGN |
3CWW Chain:A ((524-917)) | --DTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEY----AYAAE---LAGLSYDLQNTIY----GMYLSVKGYND--------KQPILLKKIIEKMATF-----EIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT-EVAWTK--DELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDM-QSTSENMFLELFAQII----SEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSI-EDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3CWW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -139360 for 2765 contacts (-50.4/contact) +
2D Compatibility (PS) -39234 + (NN) -8846 + (LL) 2684
1D Compatibility (HY) -6400 + (ID) 2150
Total energy: -193306.0 ( -69.91 by residue)
QMean score : 0.432
|
|
|