Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIVEGVSLHLIKNQQFK--TNHLTFRFSGDFN---NKTVARRSLVAQMLVTANAKYPKVQEFREKLASLYGASLSTKISTKGLVHIVDIDIVFVKNTFTLEQENIVEQIITFLEDMLFSPLISLEQYQTSIFDTEKKNLIQYLEADIE-DNFYSSDLALKSLFYNNKTLRLPKYGTASLVESENSFTAYQEFQKMLKEDQLDIFVVGDFDDYRMIQA---F-NRMAFEPRHKVLAFDY------TQTYENITRSQ-VEDKDVNQSIMQLAYHLPITYKDEDYFALIVFNGLFGAFAHSLLFTEIREKQGLAYTIGSQFDSF----TGLFTIYAGIDKENRERFLKLINKQFNNIKMGRFSSTLLKQTKDILKMNYVLASDNPKVIVDHIYHEHYLDQF--HTSALFIDKVDDVTKSDIVSVATKLKLQAFYFLEGN |
| 3CWW Chain:A ((524-917)) | --DTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEY----AYAAE---LAGLSYDLQNTIY----GMYLSVKGYND--------KQPILLKKIIEKMATF-----EIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT-EVAWTK--DELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDM-QSTSENMFLELFAQII----SEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSI-EDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CWW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139360 for 2765 contacts (-50.4/contact) +
2D Compatibility (PS) -39234 + (NN) -8846 + (LL) 2684
1D Compatibility (HY) -6400 + (ID) 2150
Total energy: -193306.0 ( -69.91 by residue)
QMean score : 0.432
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