Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRQGLMAAVLFATFALTGCGTDSAGKSADQQLQVTATTSQIADAAENIGGKHVKVTSLMGPGVDPHLYKASQGDTKKLMSADVVLYSGLHLEGKMEDVLQKIGEQKQSAAVAEAIPKNKLIPAGEGKTFDPHVWFSIPLWIYAVDEIEAQFSKAMPQHADAFRKNAKEYKEDLQYLDKWSRKEIAHIPEKSRVLVTAHDAFAYFGNEYGFKVKGLQGLSTDSDYGLRDVQELVDLLTEKQIKAVFVESSVSEKSINAVVEGAKEKGHTVTIGGQLYSDA------MGEKGTKEGTYEGMFRHNINTITKALK
1TOA Chain:A ((37-312))-----------------------------GKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRLVVAVSETIPVSQR-LSLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHKNVEAL---RDAVQARGHV---VQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVAALA


General information:
TITO was launched using:
RESULT:

Template: 1TOA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1425 -119308 -83.72 -441.88
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -83.72
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.580

(partial model without unconserved sides chains):
PDB file : Tito_1TOA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1TOA-query.scw
PDB file : Tito_Scwrl_1TOA.pdb: