Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIRFAIIGTNWITDR-FLESAADIEDFQLTAVYSRSAERAGEFAAKHNAAHAFSDLQEMAASDCFDAVYIASPNALHKEQAVLFMNHGKHVLCEKPFASNTKETEEMISAAKANGVVLMEAMKTTFLPNFKELKKHLH--KIGTVRRFTASYCQYSSRYDAFRSGTVLNAFQPELSNGSLMDIGVYCIYPAVVLFGA-PKDVKANGYAL-SSGVDGEGTVILSYDGFEAVLMHSKISTSYAPAEIQGEDGTIVIDTIHRP-----ERVEIRYRDGRLENIAIPDPKPAMFYEAEEFVTLIKENKLESEENTFERSLTTAKIMEEARKQMGIVYPADQA
4HAD Chain:A ((23-350))MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDEGAIGSLRHVQGAFTYFNR-------DA------------GLPDIGVYPVMSTRFSTGKEPLRIQANTERDPDFGTDIYSSVKADFDDFELSFYVSTQMANRQIMVFHGTNGYIEVKSPFNANRWGPEEIELADRSHNESRIFRFQDSRQYRREVEAFARAVENGK--EEVVTLENSKLNQKVIDAIYRASEKDGWEAV-


General information:
TITO was launched using:
RESULT:

Template: 4HAD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1756 -12377 -7.05 -40.45
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -7.05
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.498

(partial model without unconserved sides chains):
PDB file : Tito_4HAD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4HAD-query.scw
PDB file : Tito_Scwrl_4HAD.pdb: