Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPVNVISVAVVASDPLTRDGALARLSSHRELD-VRAWQ--------A-GCETSVLLVLATTITAP-LLCQIEDVQKDGPSHAPKLVVVADEFSAEQVFRMIKLGLTGLLYRSQSTFDCIVETIRLSAEGRLRLPERVQ--RYLVGRIKSTPTAEPDTPCAAALAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGLI
1A04 Chain:A ((5-215))
----EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLN-MPGMNGLETLDKLREKS--LSGRIVVFSVSNHEEDVVTALKRGADGYLLK-DMEPEDLLKALHQAAAGEMVLSEALTPVLAASL-----------ERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERI-
General information:
TITO was launched using:
RESULT:
Template:
1A04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139832 for 1502 contacts (-93.1/contact) +
2D Compatibility (PS) -20635 + (NN) -8957 + (LL) 800
1D Compatibility (HY) -9600 + (ID) 1900
Total energy: -180124.0 ( -119.92 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_1A04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A04-query.scw
PDB file :
Tito_Scwrl_1A04.pdb
: