Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQGPRERMVVSAALLIRERGAHATAISDVLQHSGAPRGSAYHYFPGGRTQLLCEAVDYAGEHVAAMINEAEGG---L-ELLDALIDKYRQQLLSTDFRAGCPIAAVSVEAGDEQDRERMAPVIARAAAVFDRWSDLTAQRFIADGIPPDRAHELAVLATSTLEGAILLARVRRDLTPLDLVHRQLRNLLLAELPERSR
3DPJ Chain:A ((7-187))
-AQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFK-TKDEILAEVIRLRLARTAQMLADWQGTGDSPRARIASFIDLMIMNRAK-ITRYGCPVGSLCTELSK-----LDHAAQGQANGLFTLFRDWLQRQFAEAGC-TTEAPALAMHLLARSQGAATLAQSFHDEGFLRSEVADMHRWLD--------
General information:
TITO was launched using:
RESULT:
Template:
3DPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81350 for 1314 contacts (-61.9/contact) +
2D Compatibility (PS) -19239 + (NN) -12547 + (LL) 860
1D Compatibility (HY) -3600 + (ID) 1950
Total energy: -117826.0 ( -89.67 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_3DPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DPJ-query.scw
PDB file :
Tito_Scwrl_3DPJ.pdb
: