Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKPADHRNHAAVSTSVLSALFLGAGAALLSACSSPQHASTVPGTTPSIWTGSPAPSGLSGHDEESPGAQSLTSTLTAPDGTKVATAKFEFAN-GYATVTIATTGVGKLTPGFHGLHIHQVGKCEPNSVAPTGGAPGNFLSAGGHYHVPGHTG------TPASGDLASLQVRGDGSAMLVTTTDAFTMDDLLSGAKTAIIIHAGADNFANIPPERYVQVNGTPGPDETTLTTGDAGKRVACGVIGSG
1XSO Chain:A ((2-149))
----------------------------------------------------------------------KAVCVLAG-SGDVKGVVHFEQQDEGAVSVEGKIE---GLTDGLHGFHIHVFGDNTN-----------GCMSAGSHFNPENKNHGAPGDTDRHVGDLGNVTAE-GGVAQFKITDSLISLKGPNSIIGRTAVVHEKADDLGK-------------GGNDESLKTGNAGGRLACGVIGYS
General information:
TITO was launched using:
RESULT:
Template:
1XSO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69901 for 1125 contacts (-62.1/contact) +
2D Compatibility (PS) -15955 + (NN) -13481 + (LL) 1676
1D Compatibility (HY) -4400 + (ID) 2100
Total energy: -104161.0 ( -92.59 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1XSO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XSO-query.scw
PDB file :
Tito_Scwrl_1XSO.pdb
: