Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTDVARLLALRSFTELGARQRARALLDAGSFRELLDPFAGVQSPWLERQGIVPQADDGVVVARGLLDGQPAVLAAIEGAFQGGSLGEVSGAKIAGALELAAEDNRNGVPTRALLLLETGGVRLQEANLGLAAIAEIQAAIVDLQRYQPVVAVIAGPVGCFGGMSIAAGLCSYVLVTRE-ARLGLNGPQVIEQEAGIAEYDSRDRPFIWSLTGGE-QRFASGLADAYLADDLDEVRTSVLAYFAKGLPARPRCRRAEDYLRRLGDLDTAEQPDAAGVRRLYQGLGQGDAT |
1VRG Chain:A ((38-259)) | ------VEKQHRAGKLTAWERLELLLDPGTFVEIDK-FVEHRNTYFG-LDKVKLPRDGVITGVGEINGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALK-----MGIPVIGINDSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGP--CAGGAVYSPALTDFIVMVDQTARMFITGPNVIKAVTGEE-ISQED------LGGAMVHNQKSGNAHFLADNDEKAMSL-VRTLLSYLPSNNAEEPPVEDPDTSLETPEDILDILPDNPNKGYDVRDVIKRV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VRG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107775 for 1878 contacts (-57.4/contact) +
2D Compatibility (PS) -24373 + (NN) -11572 + (LL) 792
1D Compatibility (HY) -8800 + (ID) 3050
Total energy: -154778.0 ( -82.42 by residue)
QMean score : 0.348
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