Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNAFSLAPLFRHSVGFDRFNDLFESALRNEAGSTYPPYNVEKHGDDEYRIVIAAAGF---QEEDLDLQVERGVLTVSGGKREKSTDNVTYLHQGIAQRAFKLSF-RLADHIEVK--AASLANGLLNIDLVRLVPEEAKPKRIAINGQRPALDNQ
1X5M Chain:A ((19-103))
----------------------------------KISNYGWDQSD-KFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNL-N-------------GKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKV---------------------
General information:
TITO was launched using:
RESULT:
Template:
1X5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63761 for 501 contacts (-127.3/contact) +
2D Compatibility (PS) -8245 + (NN) 2125 + (LL) 3588
1D Compatibility (HY) -8000 + (ID) 500
Total energy: -74793.0 ( -149.29 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_1X5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X5M-query.scw
PDB file :
Tito_Scwrl_1X5M.pdb
: