Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQG--TAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE
3M7N Chain:D ((17-237))
--RLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPGPDR-----RSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDA-----------GVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTR-DEVKQAIELAKKGALQIYEMQREAI--
General information:
TITO was launched using:
RESULT:
Template:
3M7N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93768 for 1837 contacts (-51.0/contact) +
2D Compatibility (PS) -24026 + (NN) -11873 + (LL) 1032
1D Compatibility (HY) -12800 + (ID) 3850
Total energy: -145285.0 ( -79.09 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_3M7N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M7N-query.scw
PDB file :
Tito_Scwrl_3M7N.pdb
: