Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYEKVE
3PPT Chain:A ((2-131))
----ADLAGKWILESSENFDDYMKAVGVGMVMRKMANAATPTQEIKIDGDSWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQDQKG-SPDSILSREVKDGKMHMILKVNDVVCTRIYKRVD
General information:
TITO was launched using:
RESULT:
Template:
3PPT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35583 for 934 contacts (-38.1/contact) +
2D Compatibility (PS) -14464 + (NN) -2411 + (LL) 520
1D Compatibility (HY) -10800 + (ID) 2900
Total energy: -65638.0 ( -70.28 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_3PPT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PPT-query.scw
PDB file :
Tito_Scwrl_3PPT.pdb
: