Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKIGESFEEETVDGRKCRSLATWENENKIYCKQTLIEGDGPKTYWTRELAND-ELILTFGADDVVCTRIYVRE
3F8A Chain:A ((1-137))
-PNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVWTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELIETMTADDVVCTKVYVRE
General information:
TITO was launched using:
RESULT:
Template:
3F8A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38947 for 955 contacts (-40.8/contact) +
2D Compatibility (PS) -15156 + (NN) -6329 + (LL) 208
1D Compatibility (HY) -16000 + (ID) 4950
Total energy: -81174.0 ( -85.00 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_3F8A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F8A-query.scw
PDB file :
Tito_Scwrl_3F8A.pdb
: