Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNFSGNWKIIRSENFEEMLKALGVNMMMRKIAVAAASKPAVEIKQENDTFYIKTSTTVRTTEINFKIGEEFEEQTVDGRPCKSLVKWESGNKMVCEQRLLKGEGPKTSWSRELTNDGELILTMTADDVVCTRVYVRE
2CBR Chain:A ((1-136))
-PNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKVGEGFEEETVDGRKCRSLPTWENENKIHCTQTLLEGDGPKTYWTRELAND-ELILTFGADDVVCTRIYVRE
General information:
TITO was launched using:
RESULT:
Template:
2CBR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31936 for 996 contacts (-32.1/contact) +
2D Compatibility (PS) -15497 + (NN) -7304 + (LL) 36
1D Compatibility (HY) -15200 + (ID) 5000
Total energy: -74901.0 ( -75.20 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_2CBR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CBR-query.scw
PDB file :
Tito_Scwrl_2CBR.pdb
: