Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
2W3T Chain:A ((1-160))
-SVLQVLHIPDERLRKVAKPVEE-----VNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRD----ERLVLINPELLEKS--GET----GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEK---------------------
General information:
TITO was launched using:
RESULT:
Template:
2W3T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77694 for 1249 contacts (-62.2/contact) +
2D Compatibility (PS) -17345 + (NN) -3652 + (LL) -64
1D Compatibility (HY) -12800 + (ID) 2650
Total energy: -114205.0 ( -91.44 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_2W3T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W3T-query.scw
PDB file :
Tito_Scwrl_2W3T.pdb
: